From: A redeemed strategy for molecular autopsy in unexplained infant deaths
Single Nucleotide Variation (SNV) | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Case | Gender | Death time | Gene | Chr | cHGVS | pHGVS | Exon | Zygosity | Mode | Type | Phenotype | Disease |
Case 1 | Male | 3 years | LIG4 | chr13 | c.2141T > A | p.Leu714* | EX2E | Het | AR | LP | Congenital immunodeficiency | LIG4 syndrome (OMIM:606,593) |
c.833G > T | p.Arg278Leu | EX2E | Het | P | ||||||||
Case 2 | Male | 2 years | CPA6 | chr8 | c.107G > A | p.Arg36His | EX1 | Het | AD/AR | LP | Status epilepticus | Familial temporal lobe epilepsy 5 (OMIM:614,417) |
Case 3 | Female | 2 years | GLB1 | chr3 | c.1343 A > T | p.Asp448Val | EX13 | Het | AR | P | Congenital brain injury | GM1 gangliosidosis/β-galactosidase deficiency 1 (OMIM:230,500) |
c.1063 C > T | p.Gln355* | EX10 | Het | P | ||||||||
Case 4 | Male | 2 years | RB1 | chr13 | c.607 + 1G > T |  | IVS6 | Het | AD | P | Malignant tumors in both eyes | Retinoblastoma (OMIM:180,200) |
Copy Number Variation (CNV) | ||||||||||||
Case | Gender | Death time | Result | Include coding genes | Phenotype | Disease | ||||||
Case 5 | Male | 28 days | 46,XN, del(11q23.3).seq[GRCh37/hg19](118,359,328–118,851,946)*1 | ARCN1 DDX6 KMT2A(intron10-3’UTR) TREH, etc. | Leukemia | KMT2A gene is associated with mixed type leukemia. | ||||||
Case 6 | Male | 3 years | 46,XN, dup(13q33.3-q34).seq[GRCh37/hg19](107,220,767–110,807,744)*3 | LIG4 COL4A1 IRS2, etc. | Brain tumor | COL4A1 gene is associated with autosomal dominant pons microvascular disease. |