Table 6 Predicted neo-epitopes with an affinity value to the HLA alleles < 100 nM, derived from missense mutations, are listed with selected information.

RFN43 G659Vfs*41

TQLARFFPI

35.39

1.23%

N/A

N/A

SPECC1 N303Tfs*63

QMLPTLSTL

69.86

0.36%

N/A

N/A

SPECC1 N303Tfs*63

LLLGVPQTA

72.97

0.36%

N/A

N/A

ARID1A D1850Tfs*33

CLPGLTHPA

94.71

0.34%

N/A

N/A

CSMD3 F3640Lfs*61

FLHLYLQDL

34.80

0.28%

N/A

N/A

CSMD3 F3640Lfs*61

YLQDLDFIF

61.21

0.28%

N/A

N/A

ARID1A2 F2141Sfs*59

WLRGTAWQL

65.54

0.22%

N/A

N/A

PROTEIN

PEPTIDE

A*03:01

CSMD3 F3640Lfs*61

SIQDVQFMK

89.24

0.28%

N/A

N/A

CSMD3 F3640Lfs*61

ITMAKQLLK

9.19

0.28%

N/A

N/A

PROTEIN

PEPTIDE

A*24:02

N/A

N/A

N/A

N/A

PROTEIN

PEPTIDE

B*07:02

RFN43 G659Vfs*41

HPQRKRRGV

73.06

1.23%

N/A

N/A

RFN43 G659Vfs*41

VPPSPPLAL

84.22

1.23%

N/A

N/A

SPECC1 N303Tfs*63

TPLRVQSVL

26.51

0.36%

N/A

N/A

BRD3 P24Rfs*24

SPTPASPAA

82.17

0.24%

N/A

N/A

BRD3 P24Rfs*24

SPAARPTSC

58.76

0.24%

N/A

N/A

ARID1A2 F2141Sfs*59

WPTWLRGTA

40.77

0.22%

N/A

N/A

ARID1A2 F2141Sfs*59

VPLQCRRAV

9.78

0.22%

N/A

N/A

PROTEIN

PEPTIDE

B*08:02

RFN43 G659Vfs*41

TQLARFFPI

48.47

1.23%

N/A

N/A

LARP4B T163Hfs*47

VLKKHWNSA

59.58

0.43%

N/A

N/A

PROTEIN

PEPTIDE

B*27:05

SPECC1 N303Tfs*63

LRVQSVLLL

46.92

0.36%

N/A

N/A

ARID1A D1850Tfs*33

WRIGGGTPL

51.15

0.34%

N/A

N/A

CTCF T204Nfs*26

QRCRCVCLR

94.17

0.32%

N/A

N/A

PROTEIN

PEPTIDE

B*39:01

RFN43 G659Vfs*41

TQLARFFPI

87.73

1.23%

N/A

N/A

LARP4B T163Hfs*47

YHRWIVTSM

71.78

0.43%

N/A

N/A

SPECC1 N303Tfs*63

HQAPQVAML

80.74

0.36%

N/A

N/A

ARID1A D1850Tfs*33

WRIGGGTPL

6.08

0.34%

N/A

N/A

BLM N515Mfs*16

MKALISQEM

85.03

0.22%

N/A

N/A

BLM N515Mfs*16

SQEMFSQAL

35.43

0.22%

N/A

N/A

PROTEIN

PEPTIDE

B*40:01

BLM N515Mfs*16

QEMFSQALL

8.02

0.22%

N/A

N/A

PROTEIN

PEPTIDE

B*58:01

LARP4B T163Hfs*47

VTCILYHRW

12.22

0.43%

N/A

N/A

LARP4B T163Hfs*47

TSMCQSQRW

10.43

0.43%

N/A

N/A

B2M L15Ffs*41

AVLALLSFW

32.16

0.25%

N/A

N/A

BRD3 P24Rfs*24

TSCSTCRMW

30.06

0.24%

N/A

N/A

ARID1A2 F2141Sfs*59

LATPPSAAW

7.45

0.22%

N/A

N/A

BLM N515Mfs*16

KALISQEMF

23.69

0.22%

N/A

N/A

PROTEIN

PEPTIDE

B*15:01

UBR5 E2121Kfs*28

VQNQGHLLM

37.86

0.49%

N/A

N/A

CTCF T204Nfs*26

NQKEQTALY

58.38

0.32%

N/A

N/A

CSMD3 F3640Lfs*61

CMTPTQSQW

31.13

0.28%

N/A

N/A