Fig. 5
From: Characterizing and forecasting neoantigens-resulting from MUC mutations in COAD
SCNA module provides the comparison of tumor infiltration levels among tumors with different somatic copy number alterations for a given gene. SCNAs are defined by GISTIC 2.0, including deep deletion (−2), arm-level deletion (−1), diploid/normal (0), arm-level gain (1), and high amplification (2). Box plots are presented to show the distributions of each immune subset at each copy number status in COAD, i.e., A MUC16; B MUC4; C MUC5B; D MUC17; E MUC2; F MUC6. The infiltration level for each SCNA category is compared with the normal using a two-sided Wilcoxon rank-sum test