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Table 2 Putative biomarkers for evaluating anti-TNF therapeutic efficacy in UC patients

From: Predictive biomarkers for anti-TNF alpha therapy in IBD patients

Candidate gene

Anti-TNF therapy: UC patients

Genetic variants NR vs R

Expression NR vs R

• TLR2

rs3804099 [T/C]

–

• TLR2

rs11938228 [C/A]

–

• TLR2

rs1816702 [T/C]

–

• TLR2

rs4696480 [A/T]

–

• TLR4

rs5030728 [G/A]

–

• TLR9

rs352139 [G/A]

–

• LY96

rs11465996 [G/C]

–

• IFNG

rs2430561 [A/T]

–

• IL17A

rs2275913 [A/G]

–

Mucosal transcripts

• TNF-α

–

↑

• IL-17A

–

↑

• IFN-γ

–

↑

• OSM

–

↑

• IL-7Ra

–

↑

• miRNAs

–

↑

• TREM1

–

↓

HP

–

↑

CD177

 

↑

GPR84

 

↑

CST7

 

↑

S100A12

 

↑

ARG1

 

↑

ANXA3

 

↑

ANKRD22

 

↑

Genomic

 

↑

  1. aA reduced mucosal transcript levels of IL-7R also observed in responders to immunosuppressive/corticosteroids, anti-TNF, or anti-a4b7 therapies in both severe UC patients. TNF-α tumour necrosis factor-α, IFN-γ interferon-γ, IL-17A interleukin-17A, miRNAs MicroRNAs, OSM Oncostatin M, IL-7R interleukin-7 receptor, ↓ increase in expression, -: not known. A, adenine, C cytosine, chr chromosome, G guanine, MAF minor allele frequency, NR no response, OR odds ratio, R response, T thymine, TNF tumour necrosis factor, CI confidence interval, IBD inflammatory bowel disease, TREM1 Triggering receptor expressed on myeloid cells 1. HP- Haptoglobin, CD177-NB1 glycoprotein, GPR84-G-protein coupled receptor 84, CST7-Cystatin F, S100A12- S100 calcium-binding protein A12, ARG1-arginase 1, ANXA3-Annexin A3, ANKRD22- ankyrin repeat domain 22